Unable to load external JavaScript file

I'm having trouble getting this codepen code to work on my local machine:

http://codepen.io/desandro/pen/mCdbD/

Whenever I attempt to load the JavaScript as an external script, it doesn't function correctly:

<!DOCTYPE html>
<html lang = "en">

<script src="isotope.pkgd.js"></script>
<script src="jquery.min.js"></script>
<script src="isotopes.js"></script>

However, if I manually include the file in the markup:

<!DOCTYPE html>
<html lang = "en">

<script src="jquery.min.js"></script>
<script src="isotope.pkgd.js"></script>
<script>
// JavaScript functionality
</script>

<link rel = "stylesheet" type= "text/css"  href = "style.css">

<h1>Isotope - filtering with search field and button filters</h1>...

It seems to work intermittently. Can someone provide guidance on how to successfully load the external js file?

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